: a toolkit for quantitative Omics analysis

File input

Data table

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Run example file

For feedback and bugs, please create an issue in the software repository or write the main developer: veits@bmb.sdu.dk

File specific settings

(modify if necessary)

Select and adjust

Select id and data columns:

Select ID column

Select quantitative columns

Simple manipulations and corrections:

Proceed to experimental design

Automatic selection of experimental groups

Find most suitable settings. You can manually edit the experimental design in the table below. Replicates with equal number and of the same sample type will be summarized to one replicate.

Threshold for string distance

String distance type

Assign Sample Types and Batch Number

Select columns for setting sample type

Set to this sample type

Select columns for setting batch number

Set to this batch number

Proceed to data pre-processing

Note: Samples with equal group and replicate number will be merged.

Data treatment pre-submission

Add or delete data columns

Pick the samples you want to remove

The current state:

Fill with empty columns

Data manipulation and adjustment

Is the data already log-transformed?

Maximum number of missing values per feature

Normalization method

Summarize to id features

Correction method

Summary:

Proceed to interaction with apps

Analyze the table with the different apps

Statistical testing

URL

Clustering

URL

Investigate protein complex behavior

URL

app_log

VSClust_results

PolySTest_results